Introducing bdclean: a user friendly biodiversity data cleaning pipeline
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چکیده
منابع مشابه
Correction: LotuS: an efficient and user-friendly OTU processing pipeline
Author details Department of Structural Biology, Vlaams Instituut voor Biotechnologie (VIB), Pleinlaan 2, Brussels 1050, Belgium. Department of Bioscience Engineering, Vrije Universiteit Brussel, Pleinlaan 2, Brussels 1050, Belgium. Structural & Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, Heidelberg 69117, Germany. Molecular Medicine Partnership ...
متن کاملLotuS: an efficient and user-friendly OTU processing pipeline
BACKGROUND 16S ribosomal DNA (rDNA) amplicon sequencing is frequently used to analyse the structure of bacterial communities from oceans to the human microbiota. However, computational power is still a major bottleneck in the analysis of continuously enlarging metagenomic data sets. Analysis is further complicated by the technical complexity of current bioinformatics tools. RESULTS Here we pr...
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The increasing public availability of personal complete genome sequencing data has ushered in an era of democratized genomics. However, read mapping and variant calling software is constantly improving and individuals with personal genomic data may prefer to customize and update their variant calls. Here, we describe STORMSeq (Scalable Tools for Open-Source Read Mapping), a graphical interface ...
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Data cleaning and ETL processes are usually modeled as graphs of data transformations. The involvement of the users responsible for executing these graphs over real data is important to tune data transformations and to manually correct data items that cannot be treated automatically. In this paper, in order to better support the user involvement in data cleaning processes, we equip a data clean...
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Atmospheric data analysis is an important area of scientific endeavor, with both government and industrial applications. Our work focuses on clustering particle data acquired via an Aerosol Time-of-Flight Mass Spectrometer (ATOFMS), which is sold and marketed by TSI, Inc. Most papers and software tools developed by the single-particle mass spectrometry community use the ART-2a clustering algori...
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ژورنال
عنوان ژورنال: Biodiversity Information Science and Standards
سال: 2018
ISSN: 2535-0897
DOI: 10.3897/biss.2.25564